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Pull requests: scverse/rustar-aligner

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Pull requests list

genome: --genomeType SuperTranscriptome
#161 opened Jul 29, 2026 by BenjaminDEMAILLE Contributor Loading…
genome: --genomeTransformOutput SAM reports original coordinates
#160 opened Jul 29, 2026 by BenjaminDEMAILLE Contributor Loading…
solo: --runMode soloCellFiltering
#159 opened Jul 29, 2026 by BenjaminDEMAILLE Contributor Loading…
solo: --soloFeatures Transcript3p, with --soloClusterCBfile
#158 opened Jul 29, 2026 by BenjaminDEMAILLE Contributor Loading…
solo: --soloCellReadStats CB writes CellReads.stats
#157 opened Jul 29, 2026 by BenjaminDEMAILLE Contributor Loading…
solo: EmptyDrops_CR on CellRanger's actual statistics (SGT ambient profile, libc++ sampler)
#156 opened Jul 29, 2026 by BenjaminDEMAILLE Contributor Loading…
bam: optional htslib writer behind the htslib-bam feature (~17% faster at 16 threads)
#153 opened Jul 28, 2026 by BenjaminDEMAILLE Contributor Loading…
solo: --soloUMIfiltering MultiGeneUMI_All (closes #144)
#152 opened Jul 28, 2026 by BenjaminDEMAILLE Contributor Loading…
1
bam: --outBAMsortingBinsN spills the coordinate sort to disk bins
#151 opened Jul 28, 2026 by BenjaminDEMAILLE Contributor Loading…
solo: cbMinP posterior threshold, oneExact guard, adapter-anchored geometry
#150 opened Jul 28, 2026 by BenjaminDEMAILLE Contributor Loading…
5
chimeric: --chimMultimapNmax enumeration, and --chimFilter banGenomicN
#149 opened Jul 28, 2026 by BenjaminDEMAILLE Contributor Loading…
clip: CellRanger4 3' poly-A trim
#148 opened Jul 28, 2026 by BenjaminDEMAILLE Contributor Loading…
2
CLI + output parity: SAM/SJ/read-input knobs and the STAR limit surface
#147 opened Jul 28, 2026 by BenjaminDEMAILLE Contributor Loading…
aligner core: annotated-junction stitching, alignEndsType, in-recursion length penalty
#146 opened Jul 28, 2026 by BenjaminDEMAILLE Contributor Loading…
1
feat: STARlong binary + long-read window-coverage filter
#116 opened Jul 24, 2026 by BenjaminDEMAILLE Contributor Loading…
genomeGenerate: libsais suffix-array builder, selected by --limitGenomeGenerateRAM
#109 opened Jul 23, 2026 by BenjaminDEMAILLE Contributor Loading…
ProTip! What’s not been updated in a month: updated:<2026-06-29.