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@SystemsBioinformatics

Systems Biology Lab, Vrije Universiteit Amsterdam

This is the code repository of the Systems Biology Lab. Our lab studies the molecular networks inside cells that give rise to cell behaviour and fitness.

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  1. stochpy stochpy Public

    StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks

    Python 44 11

  2. cbmpy cbmpy Public

    CBMPy is a Python based platform for constraint based modelling and analysis.

    Python 20 4

  3. ecmtool ecmtool Public

    Uncover organisms' metabolic blueprints

    Python 18 6

  4. parcr parcr Public

    Construct parser combinators in R

    HTML 6

  5. dynamic-community-fba dynamic-community-fba Public

    Dynamic Community FBA repository

    Python 4

  6. cbmpy-metadraft cbmpy-metadraft Public

    CBMPy Metadraft: a flexible and extensible genome-scale model reconstruction tool

    Python 2 1

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